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Table 2 Primers used to amplify fragments suitable for detecting mutation by CTCE

From: Mapping mitochondrial heteroplasmy in a Leydig tumor by laser capture micro-dissection and cycling temperature capillary electrophoresis

   

Template,fragment#

  

Annealing

#

Start(bp)

End(bp)

fromfirstPCR

“Forward” primer(5′–3′)

“Reverse” primer(5′–3′)

Temperature (°C)

1

16569

25

1

aTGCATGGAGAGCTCCCGTGAGTGG

CCCCTTAAATAAGACATCACGAT

52

2

42

126

1

aATTAACCACTCACGGGAGCTCTC

AGGATGAGGCAGGAATCAAAGAC

55

4

131

181

1

aCACCCTATGTCGCAGTATCTGTC

CACACTTTAGTAAGTATGTTCGC

55

6

483

153

1

aGGGGTTAGCAGCGGTGTGTGTGTG

TCCCACTCCCATACTACTAATCT

55

7

530

633

1

aTACCCAGCACACACACACCGCTG

CAAACCTATTTGTTTATGGGGTGA

55

8

673

705

1

aTTAGAGGGTGAACTCACTGGAAC

GGTTTGGTCCTAGCCTTTCTATT

58

82

7031

1734

10

aACGACACGTACTACGTTGTAGCC

AATATGATAGTGAAATGGATTTT

52

84

7340

7416

10

aCTTTCTTCCCACAACACTTTCTC

TCTCAAATCATGAAAATTATTAAT

55

125

11029

11086

16

aTTAGGAGGGGGGTTGTTAGGGGGT

CATCCCTCTACTATTTTTTAACC

58

127

11193

11243

16

aACCAGCCAGAACGCCTGAACGCA

GGTGTTGTGAGTGTAAATTAGTG

55

128

11283

11311

16

aTGTGCCTGCGTTCAGGCGTTCTGG

TAATCATATTTTATATCTTCTTC

60

130

11437

11492

16

aTTGACCCAGCGATGGGGGCTTCGA

GAGCCAACAACTTAATATGACTA

55

176

15201

15257

22

aAGAATCGTGTGAGGGTGGGACTGT

AGTAATTACAAACTTACTATCCG

60

177

15274

15377

22

aAGTAGACAGTCCCACCCTCACAC

GGTGATTTTATCGGAATGGGAGG

60

178

15394

15448

22

aCTAGGAATCACCTCCCATTCCGA

TAATGTCATTAAGGAGAGAAGGAA

55

181

15761

15864

22

aACCTCCTCATTCTAACCTGAATC

CAGGCCCATTTGAGTATTTTGTTT

55

184

16080

16130

23

aCAAGTATTGACTCACCCATCAAC

ACAGGTGGTCAAGTATTTATGGTA

57

185

16170

16272

23

aGTGGGTGAGGGGTGGCTTTGGAGT

CCAATCCACATCAAAACCCCCTC

56

187

16263

16366

23

aAACTGCAACTCCAAAGCCACCCC

CCCTATCTGAGGGGGGTCATCCAT

58

  1. a=tailsequence(CCCGCCGCCCCCGCCCGGG)
  2. GC-Clamp=(6FAM-CGCCCGCCGCGCCCCGCGCCCGTCCCGCCGCCCCCGCCCGGG)