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Table 1 Studied proteins, primary antibodies, source and dilutions of antibodies, staining patterns, and interpretation (cut-off) criteria used in the present study

From: Expression profiling of 21 biomolecules in locally advanced nasopharyngeal carcinomas of Caucasian patients

Protein

Antibody [clone, source]

Antibody dilution

Time/Pretreatment

Incubation Time

Cutoff (%)

Staining pattern

Cell adhesion molecules

      

  E-cadherin

HECD-11

1:30

20 min / ER1

60 min

IRS ≥5

C, C/M

  P-cadherin

562

1:200

20 min / ER2

O/N

IRS ≥5

C, C/M

Cell assembly molecules

      

  Fascin-1

IM201

1:400

20 min / ER1

O/N

5%

C

  Cytokeratin Multi

AE1/AE31

1:100

10 min / Enzyme 1

20 min

1%

C

Cell cycle regulators

      

  Cyclin D1

SP43

1:80

20 min / ER1

30 min

IA (5%)

N

Cell growth molecules

      

  VEGF-A

VG14

1:75

20 min / ER2

60 min

5%

C

  VEGF-C

18-2255, pl5

1:250

20 min / ER1

O/N

5%

C

  Phospho-mTORSer2448

49 F96

1:30

20 min / ER1

20 min

5%

C, C/PN

Cell proliferation molecules

      

  Ki67

MIB14

1:70

15 min / ER2

20 min

IA (13%)

N

Cell receptors

      

  EGFR

31 G75

1:50

8 min / Enzyme 2

20 min

10%

M, C/M

  VEGFR-2

55B116

1:450

20 min / ER2

O/N

5%

C, C/N

  VEGFR-3

KLT91

1:50

15 min / ER1

O/N

5%

C

DNA repair molecules

      

  ERCC1

8 F12

1:300

15 min / ER2

30 min

50%

N, C/N

  p53

DO-74

1:100

20 min / ER1

20 min

50%

N, N/C

Inflammation mediators

      

  COX-2

4H121

1:300

20 min / ER1

O/N

IRS≥3

C

Microtubule assembly

      

  MAPT (Tau)

2B2.1007

1:100

20 min / ER1

O/N

5%

C, N, C/N

Molecules with kinase activity

      

  Phospho-AKTSer473

D9E6

1:150

20 min / ER2

O/N

5%

C, N, C/N

  Phospho-GSK-3βSer9

5B36

1:50

20 min / ER1

O/N

5%

C, N, C/N

  Phospho-p44/42 MAPKThr202/Tyr204

20 G116

1:1000

20 min/ ER1

O/N

5%

C, N, C/N

Transcriptional activator or repressor

      

  p63

4A41

1:50

20 min / ER2

60 min

5%

N

Tumor suppressor

      

  PTEN

6H2.14

1:300

20 min / ER2

60 min

10%

C, N, C/N

  1. 1Leica Biosystems, Newcastle, UK; 2Thermo Fisher Scientific, Fremont, CA;3Spring Bioscience, Pleasanton, CA; 4Dako, Glostrup, Denmark; 5Invitrogen, Carlsbad, CA; 6CST: Cell Signaling Technology, Danvers, MA; 7United States Biological, Swampscott, MA.
  2. ER1: Epitope Retrieval 1 (citric acid, pH 6); ER2: EDTA (pH 8.8); IA: image analysis; IRS: immunoreactive score=Intensity (0–3) +% of stained cells (0:0-5%, 1:6-25%, 2:26-50%, 3:>50%); min: minutes; M: membrane; N: nuclear; O/N: overnight; pl: polyclonal; PN: perinuclear; C: cytoplasm; C/M: cytoplasm/membrane.