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Table 3 Clone library data

From: Use of cultivation-dependent and -independent techniques to assess contamination of central venous catheters: a pilot study

 

Bacterial species

External

Internal

Mix

Alphaproteobacteria

Afipia broomeae

  

3 (98%)

 

Bradyrhizobium japonicum

  

5 (96–98%)

 

Bradyrhizobium sp.

  

1 (96%)

Betaproteobacteria

Acidovorax sp.

  

3 (94–99%)

 

Alcaligenes sp.

  

2 (96–98%)

 

Burkholderia cepacia

  

1 (96%)

 

Burkholderia sp.

1 (97%)

 

3 (98–99%)

 

Delftia tsuruhatensis

1 (96%)

  
 

Diaphorobacter sp.

  

1 (98%)

 

Massilia sp.

2 (97–98%)

  

Gammaproteobacteria

Acinetobacter junii

 

11(90–99%)

 
 

Acinetobacter sp.

 

10(98–99%)

 
 

Pseudomonas aeruginosa

1 (95%)

11(94–99%)

 
 

Pseudomonas sp.

 

1 (97%)

 
 

Serratia sp.

  

2 (99%)

 

Stenotrophomonas maltophilia

3 (98–99%)

3 (96–98%)

1 (97%)

 

Stenotrophomonas sp.

 

3 (96–99%)

 

Deltaproteobacteria

Uncultured Deltaproteobacteria

9 (97–99%)

  

Firmicutes

Enterococcus faecium

1 (99%)

2 (98%)

 
 

Enterococcus lactis

 

1 (98%)

 
 

Peptostreptococcus octavius

  

5 (93–95%)

 

Staphylococcus epidermidis

34 (88–99%)

16 (95–99%)

5 (96–99%)

 

Staphylococcus haemolyticus

3 (95–98%)

  
 

Staphylococcus pasteuri

 

3 (91–99%)

 
 

Streptococcus pneumoniae

  

1 (97%)

 

Uncultured Bacillales bacterium

1 (92%)

  

Actinobacteria

Corynebacterium sp.

 

1 (99%)

 
 

Kocuria rhizophila

1 (99%)

  
 

Micrococcus luteus

1 (97%)

  
 

Propionibacterium acnes

2 (98%)

  

Unknown

Uncultured bacterium clone 654931

2 (98–99%)

 

1 (99%)

 

Uncultured organism clone MC060411

  

1 (95%)

 

Total

62

62

35

  1. Blast results of the retrieved sequences from the three clone libraries from external, internal and mixed biofilm samples. Numbers refers to abundance of the different clones and the numbers in parentheses denote the percent ID, the clones have been identified with in the Blast search.