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Table 1

From: Molecular preservation by extraction and fixation, mPREF: a method for small molecule biomarker analysis and histology on exactly the same tissue

Biochemical Group

Biochemical Pathway

Compound

Fold change Cancer/No-cancer

p-value

q-value

Amino acid

Alanine, aspartate metabolism

alanine

1.6

0.013

0.049

  

aspartate

2.2

0.013

0.049

  

N-acetylaspartate

6.1

0.020

0.049

 

Butanoate metabolism

2-aminobutyrate

1.8

0.014

0.049

 

Cysteine, methionine metabolism

cysteine

4.6

0.049

0.061

  

cystine

2.9

0.024

0.049

  

methionine

3.6

0.012

0.049

  

S-adenosylhomocysteine

1.6

0.004

0.049

 

Glutamate metabolism

glutamate

2.4

0.019

0.049

  

N-acetyl-aspartyl-glutamate

1.9

0.014

0.049

 

Glutathione metabolism

5-oxoproline

1.9

0.017

0.049

  

cysteine-glutathione disulfide

3.4

0.043

0.060

 

Glycine, serine, threonine metabolism

betaine

2.3

0.022

0.049

  

glycine

2.6

0.020

0.049

  

serine

2.1

0.009

0.049

  

threonine

1.4

0.003

0.049

 

Histidine metabolism

histidine

1.5

0.001

0.043

 

Lysine metabolism

2-aminoadipate

2.1

0.021

0.049

  

lysine

2.3

0.027

0.052

 

Phenylalanine, tyrosine metabolism

phenylalanine

1.8

0.011

0.049

  

tyrosine

1.9

0.014

0.049

 

Tryptophan metabolism

tryptophan

1.9

0.010

0.049

 

Urea cycle; arginine, proline metabolism

arginine

1.2

0.033

0.056

  

ornithine

2.7

0.019

0.049

  

proline

1.6

0.007

0.049

  

trans-4-hydroxyproline

2.1

0.036

0.056

 

Valine, leucine, isoleucine metabolism

isoleucine

1.8

0.016

0.049

  

leucine

1.8

0.010

0.049

  

valine

1.6

0.016

0.049

Carbohydrate

Aminosugars

N-acetylglucosamine

5.9

0.028

0.052

 

Glycolysis

glucose 1-phosphate

0.7

0.033

0.056

 

Pentose metabolism

ribose

2.7

0.018

0.049

Cofactors and vitamins

Pantothenate

pantothenate

2.3

0.008

0.049

 

Tocopherol

alpha-tocopherol

2.2

0.041

0.058

Energy

Krebs cycle

fumarate

2.1

0.007

0.049

  

malate

2.0

0.006

0.049

  

succinate

1.6

0.009

0.049

  

succinylcarnitine

2.2

0.041

0.058

Lipid

Carnitine metabolism

3-dehydrocarnitine

1.9

0.023

0.049

  

acetylcarnitine

1.6

0.015

0.049

  

carnitine

1.7

0.033

0.056

  

deoxycarnitine

1.6

0.010

0.049

 

Essential fatty acid

docosahexaenoate

3.2

0.046

0.060

  

docosapentaenoate

4.2

0.018

0.049

 

Fatty acid metabolism

butyrylcarnitine

1.9

0.012

0.049

  

propionylcarnitine

2.0

0.036

0.056

  

4-hydroxybutyrate

2.1

0.023

0.049

 

Glycerolipid metabolism

choline

1.7

0.004

0.049

  

ethanolamine

3.4

0.039

0.056

  

glycerol

1.9

0.047

0.060

  

glycerophosphorylcholine

1.8

0.022

0.049

 

Long chain fatty acid

10-nonadecenoate

2.8

0.036

0.056

  

dihomo-linoleate

4.8

0.038

0.056

  

eicosenoate

3.0

0.013

0.049

  

myristoleate

1.7

0.045

0.060

  

oleate

2.1

0.038

0.056

 

Lysolipid

1-arachidonoylglycerophosphoethanolamine

1.9

0.007

0.049

  

1-arachidonoylglycerophosphoinositol

2.2

0.006

0.049

  

1-linoleoylglycerophosphoethanolamine

2.6

0.020

0.049

  

1-oleoylglycerophosphoethanolamine

2.4

0.007

0.049

  

1-oleoylglycerophosphoinositol

3.7

0.035

0.056

  

1-oleoylglycerophosphoserine

2.6

0.022

0.049

  

1-palmitoylglycerophosphoinositol

3.3

0.047

0.060

  

1-stearoylglycerophosphoethanolamine

2.2

0.019

0.049

  

1-stearoylglycerophosphoinositol

4.0

0.044

0.060

  

2-oleoylglycerophosphoethanolamine

2.4

0.004

0.049

  

2-palmitoylglycerophosphoethanolamine

2.1

0.027

0.052

 

Medium chain fatty acid

caprylate

1.2

0.046

0.060

Nucleotide

Purine and pyrimidine

methylphosphate

2.2

0.018

0.049

 

Purine metabolism, hypoxanthine/inosine

hypoxanthine

2.2

0.004

0.049

  

inosine

1.6

0.026

0.052

  

xanthine

5.2

0.030

0.055

  

xanthosine

2.0

0.014

0.055

 

Purine metabolism

adenine

1.8

0.038

0.056

  

guanosine

1.6

0.035

0.056

 

Pyrimidine metabolism

cytidine

1.9

0.034

0.056

  

pseudouridine

1.3

0.024

0.049

  

uracil

4.0

0.003

0.049

  

uridine

1.9

0.008

0.049

Peptide

gammaglutamyl

gamma-glutamylglutamate

2.3

0.032

0.056

  

gamma-glutamylglutamine

3.3

0.033

0.056

Other

Benzoate metabolism

benzoate

1.4

0.045

0.060

 

Other

glycerol 2-phosphate

2.1

0.028

0.052